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JPR Advance Access published online on August 12, 2005

Journal of Plankton Research, doi:10.1093/plankt/fbi052
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© The Author 2005. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oupjournals.org
Received May 16, 2005
Accepted August 3, 2005

Article

Inhibition of DNA amplification in marine fish larvae preserved in formalin

Díaz-Viloria N. 1, Sánchez-Velasco L. 2, and Perez-Enriquez R. 1*

1 Laboratorio de Genética Acuícola. Centro de Investigaciones Biológicas del Noroeste (CIBNOR). Mar Bermejo 195, Col. Playa Palo de Santa Rita, La Paz, Baja California Sur 23090, México
2 Departamento de Plancton y Ecología Marina. Centro Interdisciplinario de Ciencias Marinas (CICIMAR-IPN). La Paz, Baja California Sur 23090, México

* To whom correspondence should be addressed.
Perez-Enriquez R., E-mail: rperez{at}cibnor.mx


   Abstract

Recent advances in molecular biology open the possibility to use formalin-preserved specimens stored in ichthyoplankton collections for population genetics studies. Nine DNA extraction techniques were tested on Engraulis mordax larvae preserved in buffered formalin. However, none of the DNA extracts resulted in the positive amplification of mitochondrial DNA (NADH1, 16srRNA, 12srRNA, and control region fractions). An experiment with different length-time exposure to formalin done with Cynoscion parvipinnis larvae allowed us to confirm the difficulty of amplifying mtDNA from larvae preserved in formalin for long time periods and the possibility of DNA extraction and amplification from short-term (less than 48 h) formalin-fixed marine fish larvae preserved in ethanol (70%). We discuss the possible influence of physical-chemical complexes associated with the duration of preservation to inhibition of amplification reactions.


Communicating Editor: KJ Flynn
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